The Role of Wastewater Testing for SARS-CoV-2 Surveillance

Published: August 26, 2021
Version 1.0

Authors:Douglas G. Manuel, Robert Delatolla, David N. Fisman, Meghan Fuzzen, Tyson Graber, Gabrielle M. Katz, JinHee Kim, Chrystal Landgraff, Alex MacKenzie, Antonina Maltsev, Anna Majury, R. Michael McKay, John Minnery, Mark Servos, J. Scott Weese, Allison McGeer, Karen B. Born, Kali Barrett, Brian Schwartz, Peter JĂĽni on behalf of the Ontario COVID-19 Science Advisory Table and the Wastewater Surveillance Science and Implementation Tables

Key Message

Wastewater testing for SARS-CoV-2 is relatively new; however, it builds on existing public health surveillance infrastructure. There is a limited but growing evidence base for its use, despite notable interpretation challenges. Wastewater testing results have helped to inform public health policy and interventions during the COVID-19 pandemic in Ontario and other jurisdictions. Wastewater testing for SARS-CoV-2 is useful for early detection of outbreaks and surges as well as population-wide surveillance of COVID-19 that is complementary to clinical testing. Further, it offers an efficient means of SARS-CoV-2 surveillance for specific settings such as correctional facilities, shelters, and university residences. Wastewater testing can also be used for the detection and monitoring of variants of concern (VOCs)

Summary

Background

Wastewater testing has a history of informing public health action through its use to monitor health threats such as polio, antimicrobial resistance, and illicit drug use in populations. It can be used to detect components of SARS-CoV-2.

SARS-CoV-2 has characteristics which pose a challenge for public health surveillance approaches. These include a high rate of transmission by symptomaticasymptomatic, and pre-symptomatic individuals that leads to missed case detection and an interval between viral transmission to clinical testing that leads to delays in case detection. These characteristics of SARS-CoV-2 infection, along with the observation that SARS-CoV-2 is excreted in stools during all phases of infection, has led to the uptake of wastewater testing to complement SARS-CoV-2 surveillance based on clinical tests and case identification. 

Questions

What are the current and future applications of SARS-CoV-2 wastewater testing for SARS-CoV-2 surveillance?

What is required to ensure wastewater testing for SARS-CoV-2 provides accurate, reliable, and actionable information that informs public health interventions for the mitigation and management of the COVID-19 pandemic?

What are the international and Ontario experiences with wastewater testing?

Findings

Evidence of wastewater testing for SARS-CoV-2 to inform a public health response is rapidly evolving, though is currently limited to case reports. In Ontario and other jurisdictions, the main benefit to date has been the identification of new COVID-19 outbreaks in specific populations in advance of other surveillance methods. However, the more common use for wastewater testing is to monitor the prevalence of SARS-CoV-2 — a complementary approach to clinical testing.  Early outbreak detection has led to enhanced public health measures and informed communication with the public regarding COVID-19 cases and the potential risk of increased transmission. 

Wastewater testing is not without challenges. Three issues need further consideration to ensure wastewater testing reliably informs COVID-19 public health interventions. 

  1. Analytic methods: approaches for sampling and measuring viral RNA vary considerably across jurisdictions, as do the populations surveyed and the sewer networks. There is a need for improved quality assurance between analytical methods, as well as consistency in data interpretation within local context. 
  2. Surveillance programs: most wastewater testing programs worldwide are still in the developmental stages, and while capacity is expanding, there is need to transition to a sustainable system
  3. Collaboration: public health, testing laboratories, and wastewater utilities need to collaborate to ensure testing provides actionable public health intelligence which is interpreted and communicated and actioned effectively. 

Wastewater testing for COVID-19 has rapidly expanded worldwide with over 2,200 testing sites in 55 countries. The Canadian Water Network organizes the COVID-19 Wastewater Coalition, bringing together municipal utilities, researchers, public health agencies, and governments. Currently, wastewater testing for SARS-CoV-2 is performed at over 200 sites in Canada, including all provinces and two territories. Ontario launched a $12 million province-wide Wastewater Surveillance Initiative in fall 2020 led by the Ministry of Environment, Conservation and Parks. As of August 2021, all 34 public health units have joined the initiative with approximately 160 sampling locations covering over 80% of the population. Additional testing is performed by the National Microbiology Laboratory, research initiatives such as Coronavirus Variants Rapid Response Network (CoVaRR-Net) and Ontario Genomics, and university-led programs. In addition to municipal level testing, these programs perform testing in select Indigenous communities, university campuses, correctional facilities, shelters, hospitals, retirement homes, neighbourhoods, and long-term care (LTC) facilities. 

Interpretation

Wastewater testing addresses several key challenges for SARS-CoV-2 surveillance. As a surveillance approach, wastewater testing includes anyone who excretes SARS-CoV-2, whether symptomatic, asymptomatic, or pre-symptomatic, thereby potentially reducing the lag time between SARS-CoV-2 infection and surveillance reporting. A single wastewater test can measure the level of SARS-CoV-2 infection for entire populations. Wastewater testing has informed public health policy and interventions in Ontario and international jurisdictions. However, there is likely publication bias, with favourable case reports being more likely than remaining reports to be published, and there are few reports with control populations. Wastewater testing as a surveillance tool for SARS-CoV-2 is relatively new and requires ongoing development, standardization, capacity building, and sustainable infrastructure. 

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